Search by keyword or author

Pharmacophore-Based 3D-QSAR and Molecular Docking Studies of Novel 1,3,4-Thiadiazole Derivatives as Potential α-Glucosidase Inhibitors

Published: August 17, 2026

Authors

Debarshi Mondal, Priya Devi, Shalini Sharma and Harmel Singh Chahal

Keywords
α-Glucosidase inhibitors, 1,3,4-thiadiazole, Pharmacophore modelling, 3D-QSAR, Molecular docking

Abstract

Background: Metabolic Disorder Type 2 Diabetes mellitus (T2DM) is a chronic disease that involves hyperglycemia due to insulin resistance and impaired insulin secretion. α-glucosidase inhibition has been proven to be a therapeutic approach for controlling postprandial hyperglycemia and is a well-established treatment for T2DM. 1,3,4-thiadiazole is a promising pharmacophore among heterocyclic scaffolds due to its broad range of biological activities, including α-glucosidase inhibition.

Purpose: The present study was designed to identify and optimize novel 1,3,4-thiadiazole derivatives as α-glucosidase inhibitors using an integrated computer-aided drug design (CADD) approach that includes pharmacophore modeling, 3D-QSAR, molecular docking, optimization of R-groups, and ADMET prediction.

Methods: A total of 34 reported 1,3,4-thiadiazole derivatives were analyzed to build an optimal pharmacophore model (AADHR₃) as well as atom-based (R² = 0.799, Q² = 0.822) and Gaussian field-based 3D-QSAR models (R² = 0.967, Q² = 0.682). The structurally optimized lead compounds were then identified by molecular docking, R-group optimization, and ADMET prediction.

Results: The analysis of the contour map showed that bulky hydrophobic groups in the R₁ position and electron-withdrawing groups in the R₂ position were beneficial for enhancing α-glucosidase inhibitory activity. The docking score of five compounds was comparable or better than that of acarbose (−6.260 kcal/mol), with the best score being compound 25 (−6.686 kcal/mol). The designed derivatives (DM1 (−7.625 kcal/mol), DM2 (−7.418 kcal/mol), and DM3 (−7.284 kcal/mol)) showed better binding abilities and favorable interactions with Arg281, Asp282, Asp404,

Asp518, Asp616, His674, and Phe525, in addition to promising ADMET properties.

Conclusion: Pharmacophore analysis, 3D-QSAR, molecular docking, SAR, and ADMET studies indicated that the 1,3,4-thiadiazole scaffold could be a promising template for designing potent α-glucosidase inhibitors. The optimized derivatives, especially DM1–DM3, are good lead candidates for further development into therapeutic drugs for T2DM.

References

  • Acar Çevik, U., Celik, I., Işık, A., Ahmad, I., Patel, H., Özkay, Y., & Kaplancıklı, Z. A. (2023). Design, synthesis, molecular modeling, DFT, ADME and biological evaluation studies of some new 1, 3, 4-oxadiazole linked benzimidazoles as anticancer agents and aromatase inhibitors. Journal of Biomolecular Structure and Dynamics, 41(5), 1944–1958. https://doi.org/10.1080/07391102.2022.2025906
  • Akdağ, M., Çam, M. G., Ergen, D., Demir, Y., Beydemir, Ş., & Özçelik, A. B. (2025). Synthesis of new Pyridazinone derivatives and their dual inhibitory activity on aldose reductase and α-glucosidase. Bioorganic & Medicinal Chemistry Letters, 130498. https://doi.org/10.1016/j.bmcl.2025.130498
  • Asati, V., Bharti, S. K., & Budhwani, A. K. (2017). 3D-QSAR and virtual screening studies of thiazolidine-2, 4-dione analogs: Validation of experimental inhibitory potencies towards PIM-1 kinase. Journal of Molecular Structure, 1133, 278–293. https://doi.org/10.1016/j.molstruc.2016.12.006
  • Bischoff, H. B. A. G. (1994). Pharmacology of alpha-glucosidase inhibition. European Journal of Clinical Investigation, 24, 3–10. https://doi.org/10.1111/j.1365-2362.1994.tb02249.x
  • Bisht, P., Gautam, P., Bhattacharya, A., Singh, R., & Verma, S. K. (2025). Designing of xanthine-based DPP-4 inhibitors: A structure-guided alignment dependent Multifacet 3D-QSAR modeling, and molecular dynamics simulation study. Journal of Biomolecular Structure and Dynamics, 43(13), 6971–6995. https://doi.org/10.1080/07391102.2024.2329787
  • Chiba, S. (1997). Molecular mechanism in α-glucosidase and glucoamylase. Bioscience, Biotechnology, and Biochemistry, 61(8), 1233–1239. https://doi.org/10.1271/bbb.61.1233
  • Dawood, K. M., & Farghaly, T. A. (2017). Thiadiazole inhibitors: A patent review. Expert Opinion on Therapeutic Patents, 27(4), 477–505. https://doi.org/10.1080/13543776.2017.1272575
  • Gholami Rostami, E., & Fatemi, M. H. (2018). Comparative molecular field analysis and hologram quantitative structure activity relationship studies of pyrimidine series as potent phosphodiesterase 10A inhibitors. Journal of the Chinese Chemical Society, 65(11), 1293–1306. https://doi.org/10.1002/jccs.201700435
  • Gholami Rostami, E., & Fatemi, M. H. (2019). Molecular docking and receptor-based QASR studies on pyrimidine derivatives as potential phosphodiesterase 10A inhibitors. Structural Chemistry, 30(6), 2347–2368. https://doi.org/10.1007/s11224-019-01353-6
  • Gupta, S., Saha, M., Singh, R., Ahmed, S. B., & Asati, V. (2025). Multistage in silico approach to identify novel quinoline derivatives as potential c-kit kinase inhibitors. Journal of Biomolecular Structure and Dynamics, 43(11), 5313–5330. https://doi.org/10.1080/07391102.2024.2308759
  • Hanefeld, M., & Schaper, F. (2007). The role of alpha-glucosidase inhibitors (acarbose). In Pharmacotherapy of Diabetes: New Developments: Improving Life and Prognosis for Diabetic Patients (pp. 143–152). Springer US. https://doi.org/10.1007/978-0-387-69737-6_13
  • Haritha, M., Sreerag, M., & Suresh, C. H. (2024). Quantifying the hydrogen-bond propensity of drugs and its relationship with Lipinski’s rule of five. New Journal of Chemistry, 48(11), 4896–4908. https://doi.org/10.1039/D3NJ05476D
  • Hosen, S. Z., Dash, R., Khatun, M., Akter, R., Bhuiyan, M. H. R., Karim, M. R., … & Afrin, S. (2017). In silico ADME/T and 3D QSAR analysis of KDR inhibitors. Journal of Applied Pharmaceutical Science, 7(1), 120–128. https://doi.org/10.7324/JAPS.2017.70116
  • Hu, Y., Li, C. Y., Wang, X. M., Yang, Y. H., & Zhu, H. L. (2014). 1, 3, 4-Thiadiazole: Synthesis, reactions, and applications in medicinal, agricultural, and materials chemistry. Chemical Reviews, 114(10), 5572–5610. https://doi.org/10.1021/cr400131u
  • Inamdar, A., Pote, S., Sawant, S., Salve, P. S., Suryawanshi, S. S., & Palled, M. (2023). Physicochemical and pharmacokinetic properties’ screening of selected cardiovascular agents: An in-silico approach. https://doi.org/10.21203/rs.3.rs-2653667/v1
  • Jain, A. K., Sharma, S., Vaidya, A., Ravichandran, V., & Agrawal, R. K. (2013). 1, 3, 4‐Thiadiazole and its derivatives: A review on recent progress in biological activities. Chemical Biology & Drug Design, 81(5), 557–576. https://doi.org/10.1111/cbdd.12125
  • Kaya, B., Acar Çevik, U., Çiftçi, B., Duran, H. E., Türkeş, C., Işık, M., … & Beydemir, S. (2024). Synthesis, α-glucosidase, α-amylase, and aldol reductase inhibitory activity with molecular docking study of novel imidazo [1, 2-a] pyridine derivatives. ACS Omega, 9(42), 42905–42914. https://doi.org/10.1021/acsomega.4c05619
  • Kaya, B., Acar Çevik, U., Necip, A., Duran, H. E., Çiftçi, B., Işık, M., … & Beydemir, S. (2025). Design, synthesis, biological evaluation, and molecular docking studies of novel 1, 3, 4-Thiadiazole derivatives targeting both aldose reductase and α-Glucosidase for diabetes mellitus. ACS Omega, 10(18), 18812–18828. https://doi.org/10.1021/acsomega.5c00566
  • Matysiak, J. (2015). Biological and pharmacological activities of 1, 3, 4-thiadiazole based compounds. Mini Reviews in Medicinal Chemistry, 15(9), 762–775. https://doi.org/10.2174/1389557515666150519104057
  • Patel, P., Shah, D., Bambharoliya, T., Patel, V., Patel, M., Patel, D., … & Patel, A. (2024). A review on the development of novel heterocycles as α-glucosidase inhibitors for the treatment of type-2 diabetes mellitus. Medicinal Chemistry, 20(5), 503–536. https://doi.org/10.2174/0115734064264591231031065639
  • Polya, G., & Read, R. C. (2012). Combinatorial enumeration of groups, graphs, and chemical compounds. Springer Science & Business Media. https://doi.org/10.1007/978-1-4612-4664-0
  • Sharma, R., Roy, S., & Kumar, A. (2025). Drug repurposing and virtual screening. In Advances in Pharmaceutical Product Development (pp. 399–421). Springer Nature Singapore. https://doi.org/10.1007/978-981-97-9230-6_16
  • Shen, X., Saburi, W., Gai, Z., Kato, K., Ojima-Kato, T., Yu, J., … & Yao, M. (2015). Structural analysis of the α-glucosidase HaG provides new insights into substrate specificity and catalytic mechanism. Biological Crystallography, 71(6), 1382–1391. https://doi.org/10.1107/S139900471500721X
  • Shulgau, Z., Palamarchuk, I. V., Sergazy, S., Urazbayeva, A., Ramankulov, Y., & Kulakov, I. V. (2024). Synthesis, computational study, and in vitro α-Glucosidase inhibitory action of 1, 3, 4-Thiadiazole derivatives of 3-Aminopyridin-2 (1 H)-ones. Pharmaceuticals, 17(3), 377. https://doi.org/10.3390/ph17030377
  • Singh, Y., Jaswal, S., Singh, S., Verma, S. K., & Thareja, S. (2022). Dual aromatase-steroid sulfatase inhibitors (DASI’s) for the treatment of breast cancer: A structure guided ligand based designing approach. Journal of Biomolecular Structure & Dynamics, 41(20), 10604–10626. https://doi.org/10.1080/07391102.2022.2155702
  • Stitou, M., Toufik, H., Bouachrine, M., & Lamchouri, F. (2021). Quantitative structure–activity relationships analysis, homology modeling, docking and molecular dynamics studies of triterpenoid saponins as Kirsten rat sarcoma inhibitors. Journal of Biomolecular Structure and Dynamics, 39(1), 152–170. https://doi.org/10.1080/07391102.2019.1707122
  • Uddin, J., Ullah, S., Halim, S. A., Waqas, M., Ibrar, A., Khan, I., … & Al-Harrasi, A. (2023). Triazolothiadiazoles and triazolothiadiazines as new and potent urease inhibitors: Insights from in vitro assay, kinetics data, and in silico assessment. ACS Omega, 8(35), 31890–31898. https://doi.org/10.1021/acsomega.3c03546
  • Van de Laar, F. A., Lucassen, P. L., Akkermans, R. P., Van de Lisdonk, E. H., Rutten, G. E., & Van Weel, C. (2005). α-Glucosidase inhibitors for patients with type 2 diabetes: Results from a Cochrane systematic review and meta-analysis. Diabetes Care, 28(1), 154–163. https://doi.org/10.2337/diacare.28.1.154
  • Vanajothi, R., Hemamalini, V., Jeyakanthan, J., & Premkumar, K. (2020). Ligand-based pharmacophore mapping and virtual screening for identification of potential discoidin domain receptor 1 inhibitors. Journal of Biomolecular Structure & Dynamics, 38(9), 2800–2808. https://doi.org/10.1080/07391102.2019.1640132
  • Veerasamy, R., Rajak, H., Jain, A., Sivadasan, S., Varghese, C. P., & Agrawal, R. K. (2011). Validation of QSAR models-strategies and importance. Int. J. Drug Des. Discov, 3, 511–519. https://doi.org/10.37285/ijddd.2.3.1
  • Verma, S. K., Kumar, N., & Thareja, S. (2021). Gaussian field-based comparative 3D QSAR modelling for the identification of favourable pharmacophoric features of chromene derivatives as selective inhibitors of ALR2 over ALR1. Structural Chemistry, 32(3), 1289–1298. https://doi.org/10.1007/s11224-020-01714-6
  • Vishwakarma, K., & Bhatt, H. (2021). Molecular modelling of quinoline derivatives as telomerase inhibitors through 3D-QSAR, molecular dynamics simulation, and molecular docking techniques. Journal of Molecular Modeling, 27(2), 30. https://doi.org/10.1007/s00894-020-04648-2
  • Yadav, R., Imran, M., Dhamija, P., Chaurasia, D. K., & Handu, S. (2021). Virtual screening, ADMET prediction and dynamics simulation of potential compounds targeting the main protease of SARS-CoV-2. Journal of Biomolecular Structure and Dynamics, 39(17), 6617–6632. https://doi.org/10.1080/07391102.2020.1796812

How to Cite

Debarshi Mondal, Priya Devi, Shalini Sharma and Harmel Singh Chahal. Pharmacophore-Based 3D-QSAR and Molecular Docking Studies of Novel 1,3,4-Thiadiazole Derivatives as Potential α-Glucosidase Inhibitors. J. Pharm. Technol. Res. Manag.. 2026, 14, 21-48
Pharmacophore-Based 3D-QSAR and Molecular Docking Studies of Novel 1,3,4-Thiadiazole Derivatives as Potential α-Glucosidase Inhibitors

Current Issue

PeriodicityBiannually
Issue-1June
Issue-2December
ISSN Print2321-2217
ISSN Online2321-2225
RNI No.CHAENG/2013/50088

This work is licensed under a Creative Commons Attribution 4.0 International License.

Articles in Journal of Pharmaceutical Technology, Research and Management (J. Pharm. Tech. Res. Management) by Chitkara University Publications are Open Access articles that are published with licensed under a Creative Commons Attribution- CC-BY 4.0 International License. Based on a work at https://jptrm.chitkara.edu.in/. This license permits one to use, remix, tweak and reproduction in any medium, even commercially provided one give credit for the original creation.

View Legal Code of the above-mentioned license, https://creativecommons.org/licenses/by/4.0/legalcode

View Licence Deed here https://creativecommons.org/licenses/by/4.0/

Creative Commons License

Journal of Pharmaceutical Technology, Research and Management by Chitkara University Publications is licensed under a Creative Commons Attribution 4.0 International License.
Based on a work at https://jptrm.chitkara.edu.in//

Visibility, Memberships and Ethics

×

Thank You!

Your form has been submitted successfully.